The Reconstitution Model in RNA and RNA/Protein Folding and Assembly

Using this reconstitution hypothesis, we propose to predict, in a “bottom-up” manner, the folding behavior of natural RNAs and RNA-protein complexes. The results will significantly advance our understanding, either providing strong evidence for the reconstitution hypothesis and demonstrating predictive power via multiple non-trivial tests, or identifying complexities in RNA and RNA/protein behavior that can be tested and incorporated into next-generation models.

Goal: 

Using this reconstitution hypothesis, we propose to predict, in a “bottom-up” manner, the folding behavior of natural RNAs and RNA-protein complexes. The results will significantly advance our understanding, either providing strong evidence for the reconstitution hypothesis and demonstrating predictive power via multiple non-trivial tests, or identifying complexities in RNA and RNA/protein behavior that can be tested and incorporated into next-generation models.

Publications

Quantifying Nucleic Acid Ensembles with X-ray Interferometry

Xuesong Shi, Steve Bonilla, Daniel Herschlag and Pehr Harbury
Methods in Enzymology

Understanding nucleic acid-ion interactions

Jan Lipfert, Sebastian Doniach, Rhiju Das, Dan Herschlag
Annu Rev Biochem. 2014;83:813-41

DOI: 

10.1146/annurev-biochem-060409-092720